Protein PY04440 (PlasmoDB link) - New domain RNA_pol_Rpb1_4 (Pfam link)

Sequence and domain localizations (colored) at: 74...161 

  1 MYFYFFNQYNLKILEKKLLSIFKYNISSKLLQELLYLGFEYSFMYNYSLNINDFSNFIYL  60
 61 LILYKNKINNIYNNKYYEVKYNYINIFLNNYYYLKIFNNIQTILNYNIYLKINPIYSNLF 120
121 LFFNNKIKIKYSQLQQLVGYKGYVSNIKGIIYEKPIINNYINELNLYEYILSCFGSKKGI 180
181 IDTALKTADSGYLTKRLVNITNNFIIKEINCKSPFMFRYKCNMDIYGNIFYPLNLLKFKI 240
241 LQNNIINLDKGIYISFKNIYLTKYIFNKLLNLYYVNYINLYIKSVYLCNIFNNICNNCLN 300
301 YKQLYKYNLGQHIGVISSEAISEPSTQMVLRTFHANSILKYKYNQSVLKKYYIYKLYSYK 360
361 FKINKVFKFIFNFKTYLNIKFNLIFLLNKLLFKNKSNKFYLNYILPNCHIKYNFIYNSIS 420
421 KNFKCNYNNIIIKYIDNYIKYYNYNILQLLIKNSYNKWIIYNLYTYYIYFNYIKLYNINN 480
481 KGIIYYNNINKKYNILYFIKNSINYNSYYYTNSNINIINNNIKLLNSNNIIFKFNY 536

Alignement of domain consensus (first line) on the sequence (colored line).

Each position reports the amino acid with highest probability; capital letters mean highly conserved residues (i.e. with probability > 50%).

Occurence 74...161 
  1 itdaerygkledlwgktleetfe.akinnilnrdpsLdkfnpsNsiymMadSGAKGSiiN  59
 74 NKYYEVKYNYINIFLNNYYYLKIfNNIQTILNYNIYLKINPIYSNLFLFFNNKIKIKYSQ 133

 61 isQlagcrGQQavehfkidesPesrGFv  88
134 LQQLVGYKGYVSNIKGIIYEKPIINNYI 161