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Africa France Bioinformatics: South Africa | |
Institutions:
South African
National
Bioinformatics Institute (SANBI)
National Bioinformatics
Network
(NBN)
Biomedical Informatics
Research Division of the MRC (MRC-BIRD)
Computational biology
group at the University of Cape Town
Bioinformatics and
Computational Biology Unit of the University of
Pretoria
Department
of Veterinary Tropical Diseases of the University of Pretoria -
Onderstepoort; and Molecular Biology Department of the ARC-OVI
– Onderstepoort: (VTD-MB)
HIV-1 Immune Pathogenesis
and Therapeutic Research Programme (HIV-PTRP)
Council for Scientific
and Industrial Research (CSIR)
Wits
Bioinformatics (WITS-B)
Main activities:
Functional genomics and proteomics
Structural bioinformatics
EST clustering
Annotation of bacterial genomes
Molecular and virus evolution
Microarray data management and analysis
Recent publications:
Alexander Mehrle, Heiko Rosenfelder, Ingo Schupp, Coral del Val,
Dorit Arlt, Florian Hahne, Stephanie Bechtel, Jeremy Simpson, Oliver
Hofmann, Winston Hide, Karl-Heinz Glatting, Wolfgang Huber, Rainer
Pepperkok, Annemarie Poustka and Stefan Wiemann. (2006)
The LIFEdb database in 2006.
Nucleic Acids Research 34 (Database Issue): D415-D418; doi:10.1093/nar/gkj139
Poke, FS., Martin, DP., Steane, DA., Vaillancourt, RE., and Reid, JB. (2006)
The impact of intragenic recombination on phylogenetic reconstruction
at the sectional level in Eucalyptus when using a single copy nuclear
gene (cinnamoyl CoA reductase).
Molecular Phylogenetics and Evolution 39:160-170.
Wells GA, Birkholtz LM, Joubert F, Walter RD, Louw AI. (2006)
Novel properties of malarial S-adenosylmethionine decarboxylase as revealed by structural modelling.
J. Mol. Graph. Model. 24:309-318.
De Beer TA, Louw AI, Joubert F. (2006)
Elucidation of sulfadoxine resistance with structural models of the
bifunctional Plasmodium falciparum dihydropterin
pyrophosphokinase-dihydropteroate synthase.
In press. Bioorg. Med. Chem.
Varsani, A, Heath L, van der Walt, E, Rybicki EP, Williamson AL and Martin DP. (2006)
Evidence of ancient pappillomavirus recombination.
J. Gen. Virol. In Press
Shepherd, DN, Martin, DP, Varsani, A, Thomson, JA, Rybicki, EP and Klump, HH. (2006)
Restoration of native folding through reverse mutations: an indication of a new mechanism of epigenetics.
Arch. Biochem. Biophys. In Press
Contacts:
Basil ALLSOPP
Department of Veterinary Tropical Diseases
Faculty of Veterinary Science
University of Pretoria
Private Bag X04
Onderstepoort 0110, South Africa
Phone: (27) 125298426
E-Mail: basil.allsopp@up.ac.za
Sharon CASSOL
Molecular Virology and Bioinformatics Unit
Department of Medical Virology
University of Pretoria, South Africa
E-Mail: sharon.cassol@up.ac.za
Scott HAZELHURST
Wits Computational Molecular Biology Programme
University of the Witwatersrand
Johannesburg
Private Bag 3
2050 Wits, South Africa
Phone: (27) 117176181
E-Mail: scott@cs.wits.ac.za
Winston HIDE
South African National Bioinformatics Institute
University of the Western Cape
Private Bag X17
7535 Bellville, South Africa
Phone: (27) 219593645
E-Mail: winhide@sanbi.ac.za
Dan JACOBSON
National Bioinformatics Network
University of the Western Cape
Private Bag X17
7535 Bellville, South Africa
Phone: (27) 219592991
E-Mail: dan@nbn.ac.za
Fourie JOUBERT
Bioinformatics and Computational Biology Unit
University of Pretoria
Lynwood rd
Pretoria, South Africa
Phone: (27) 124205802
E-Mail: fjoubert@postino.up.ac.za
Colin KENYON
Council for Science and Industrial Research (CSIR)
Private Bag x2
1645 Modderfontein
South Africa
Phone: (27) 116052702
E-Mail: ckenyon@csir.co.za
Heikki LEHVÄSLAIHO
South African National Bioinformatics Institute
University of the Western Cape
Private Bag X17
7535 Bellville, South Africa
Phone: (27) 219592096
E-Mail: heikki@sanbi.ac.za
Darren MARTIN
Institute of Infectious Diseases and Molecular Medicine
University of Cape Town
Observatory
Cape Town, South Africa
E-Mail: darren@science.uct.ac.za
Chris SEEBREGTS
Research Information Systems Division
South African Medical Research Council
Cape Town, South Africa
E-Mail: chris.seebregts@mrc.ac.za
Cathal SEOIGHE
Department of Molecular and Cell Biology
University of Cape Town
Private Bag
Rondebosch 7701, South Africa
Phone: (27) 214066837
E-Mail: cathal@science.uct.ac.za
Vladimir B BAJIC
South African National Bioinformatics Institute
University of the Western Cape
Private Bag X17
7535 Bellville, South Africa
Phone: (27) 219592360
E-Mail: vlad@sanbi.ac.za
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