Bioinformatics and High Throughput Sequencing - 2011

• Message We have sent and will send an confirmation of registration to all
  participants. If you do not receive it within 3 days, contact us.
  
• Definitive program is available (see below)
  
• Registration is open, free and compulsory (see below)
  
• Date: 22nd of March 2011 Mark Your Agenda
  
• Venue: Institut Pasteur, Paris 15eme, large auditorium, 25,28 rue du Docteur Roux
  Access: http://www.pasteur.fr/ip/easysite/pasteur/en/institut-pasteur/address-and-access
  
• Website: http://www.lirmm.fr/~rivals/HTS-2011
  

  
  

High Throughput Sequencing (HTS) techniques have revolutionized
numerous experimental approaches in biology, ecology, agronomy, and
medecine. Their applications cover domains as diverse as genomics,
transcriptomics, epigenomics, and meta-genomics or transcriptomics.
All HTS based assays yield huge sets of short sequence reads that
require specific, involved, but efficient bionformatics processing.
This conference provides a unique forum for research in
bioinformatics dealing with HTS data analysis and an opportunity to
discover the latest developments in the field.

The 2010, and first edition, was a great success as testified by the
full auditorium and the long waiting list of participants. We are
delighted to invite you to join for the second edition of this
conference. For the second time, participation is free of charge, and
it will take place in the large auditorium of Pasteur Institute in the
center of Paris.

• 9h opening
  
• 9h10 - 9h45 Sophie Coutant, Univ. Rouen, France
  Exome Variations Analyzer (http://bioinfo.litislab.fr/EVA/) abstract
  
• 9h50 - 10h50 Ali Mortazavi, CalTech, Pasadena, USA
  Self-organizing maps for analysis and mining of functional genomic data abstract
  
• 10h50 - 11h20 Break
  
• 11h20 - 12h00 Leena Salmela, Helsinki University, Finland, http://www.cs.helsinki.fi/u/lmsalmel/
  Correction of sequencing errors in a mixed set of reads abstract
  
• 12h00 - 12h45 Jacques van Helden, Univ. Libre de Bruxelles, Belgium, http://www.bigre.ulb.ac.be/Users/jvanheld/
  RSAT peak-motifs: fast extraction of transcription binding motifs from full-size ChIP-seq datasets abstract
  
• 12h45 - 14h15 - Break
  
• 14h20 - 14h55 Philippe Gayral, Institut des Sciences de l'Evolution, Montpellier, France http://sites.google.com/site/pgayral/ http://162.38.181.25/PopPhyl/
  Reference-free transcriptome assembly in non-model organisms from next generation sequencing data abstract
  
• 14h55 - 15h45 Francesca Ciccarelli, Bioinformatics & Evolutionary Genomics, IFOM-IEO Campus, Milan, Italy http://ciccarelli.group.ifom-ieo-campus.it/fcwiki/
  Genomic Instability and the Evolution of Cancer abstract
  
• 15h45 - 16h15 Break
  
• 16h20 - 17h00 Ana Conesa, Bioinformatics and Genomics Department, Centro de Investigación Príncipe Felipe, Valencia, Spain, http://bioinfo.cipf.es/aconesa/index.html
  Differential expression with RNASeq: length and depth does matter abstract
  
• 17h00 - 17h35 Pierre Peterlongo, IRISA, Rennes http://www.irisa.fr/symbiose/pierre_peterlongo
  Biological information is in the reads - abstract
  
• 17h35 - 17h50 Dr. Rick Tearle, Complete Genomics, Mountain View, California, USA
  Complete Human Genome Sequencing of 40 Samples across 9 Different Populations - abstract
  
• 17h50 - 18h00 Closure
  

  
  

• Eric Rivals, LIRMM - CNRS, Univ. Montpellier II
  
• Stéphane Robin, INRA - AgroParisTech, Paris
  
• Claudine Médigue, Genoscope, CEA - Univ. Evry
  
• Thérèse Commes, CRBM, CNRS, Univ. Montpellier II
  
• Emmanuel Barillot, Institut Curie, Paris
  

  
  

This conference is sponsored by:

• GDR 3003 CNRS Molecular Bioinformatics http://www.gdr-bim.u-psud.fr/
  
• The national network of bioinformatics platforms: ReNaBi http://www.renabi.fr/
  
• Lab. of Computer Science, Microelectronics, and Robotics of Montpellier (LIRMM) http://www.lirmm.fr
  
• ATGC Bioinformatics Platform NGS services http://www.atgc-montpellier.fr
  
• l'INRA http://www.inra.fr/.
  

  
  

• The language of the conference is English.
  
• Location: Venue: Institut Pasteur, Paris 15eme, large auditorium, 25,28 rue du Docteur Roux
  Access: http://www.pasteur.fr/ip/easysite/pasteur/en/institut-pasteur/address-and-access
  
• Registration is now open. To register please:
  
  1. copy and paste the form HTS-2011-registration-form.txt into an email
     
  2. address this email to Elisabeth.Greverie-AT-lirmm.fr replacing -AT- by @
     
  3. add subject [SHD-2011] registration <your-NAME>
     
  4. fill the form
     
  5. send
     
• Site: http://www.lirmm.fr/~rivals/HTS-2011
  
• Meal will be at the charge of the participants.