Charlotte Dubec joins the team for an internship in collaboration with SpyGen company.
PEWO hosts, App-Spam, a new phylogenetic placement tool
SHERPAS' paper accetped in the journal Bioinformatics
PEWO: a collection of workflows to benchmark phylogenetic placement
Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals
Bioinformatics, btaa657, https://doi.org/10.1093/bioinformatics/btaa657 2020
Free author version https://hal.archives-ouvertes.fr/hal-02905244
Sherpas is a new NGS tool capable of predicting recombination in viral read sequences, given a tree and reference sequences of known virus groups.
See preprint on bioRxiv (Posted June 22, 2020):
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers