People

Principal Investigators

Eric Rivals

CNRS Research Director in Computer Science and Bioinformatics

String algorithms, Data indexing, Sequence analysis, Data structures, Genomics, Data mining, AI, Information Retrieval, Cancer

Researchers

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Julie Ripoll

postdoctoral fellow in bioinformatics

NGS processing, pipeline, statistical analysis

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Bastien Cazaux

postdoctoral fellow, former PhD and master student

Algorithms, Data structures, Bioinformatics

Doctoral Students

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Nikolay Romashchenko

PhD student in computer science

Algorithms, Metagenomics, Bioinformatics

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Pengfei Wang

PhD student in computer science

Algorithms, Modelling, Pangenomics, Bioinformatics

Master Students

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Benoît Aliaga

Master student in bioinformatics, internship on single cell transcriptome analysis for cancer

NGS processing, pipeline, single cell, spatial transcriptomics, cancer

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Charlotte Dubec

Engineering and master student in bioinformatics, internship on demultiplexing for environmental sequencing data in collaboration with SpyGen company.

algorithms, pattern matching, motif search, NGS processing, metabarcoding

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Marie Mille

Master student in bioinformatics, internship on algorithms for probabilistic motif search.

algorithms, pattern matching & recognition, motif search, PWM, diPWM, HMM

Collaborators

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Alexandre DAVID

INSERM researcher at IGF

molecular biology, cancer

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Benjamin Linard

researcher at Spygen company, former postdoctoral fellow in bioinformatics

metagenomics, entomology, bioinformatics

Alumni

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Sébastien Relier

former PhD student in biology

Epitranscriptome, Cancer biology, Mass spectroscopy, Bioinformatics

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Damien Paulet

Former engineer and postdoctoral fellow from 2014-2018.

Bioinformatics, Sequence analysis, NGS, Transcriptomics

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Samuel Juhel

former Master student co-supervised with Bastien Cazaux (LIRMM)

Algorithms, Stringology, Bioinformatics, Ecology

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Maxime Hebrard

former postdoctoral fellow, in collaboration with G. Piganeau (Arago, UPMC)

Bioinformatics, Sequence analysis, Visualisation, Metagenomics

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Sylvain Pulicani

former PhD co-supervised with Giacomo Cavalli (IGF, CNRS), co-advised with Krister Swenson (LIRMM)

Bioinformatics, Data Analysis, Evolution and Phylogeny

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Raluca Uricaru

former master and PhD student

Algorithms, Machine learning, Bioinformatics

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Amal Makrini

former engineer in bioinformatics

NGS processing, pipeline, workflow, genomics

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Guillaume Scholz

former postdoctoral fellow

Applied math, Evolution, Bioinformatics

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Julien Veyssier

software engineer (programming, development, maintenance)

Programming, Algorithms, Bioinformatics