Hameau de l'étoile
June 25-29th, 2018
Saint-Martin-de-Londres
France
France
Download the program
(1.8 Mo)
Monday, June 25
| 18:00 | Arrival at Hameau de l’Etoile in the afternoon (from 4 :00 pm – Bus from the train station at 5pm) |
| 18:00-19:30 | Stand « Peer Community in »* |
| 19:30 | Welcoming drink |
| 20:30 | Dinner |
Tuesday, June 26
| 09:20 | Welcoming |
| 9:30-10:45 KEYNOTE |
M. BLANCHETTE - Mining ancient mammalian genomes |
| 10:45-11:15 | Coffee break |
| 11:15-12:35 4x 20 min TALKS (including questions) |
F. POUYET - Identifying the neutrally evolving fraction of the human genome to infer demography and selection B. PEREZ-LAMARQUE - Modeling tools for studying host-associated microbiota inheritance from metabarcoding data C. METZIG - Prediction of Successful Clades in S. aureus in a Europe-wide database J. CORANDER - Negative frequency-dependent selection in the evolution of bacteria |
| 12:45 | Lunch |
| 14:00-15:00 3x 20 min TALKS (including questions) |
T. SANCHEZ - End-to-end Deep Learning Approach for Demographic History Inference F. PARDI - Alignment-free phylogenetic placement of metagenomes via ancestral k-mers D. BRYANT - Inferring the evolution of Niches |
| 15:00-15:15 | Break |
| 15:15-16:30 KEYNOTE |
I. MOLTKE - Inferring relatedness from genetic data |
| 16:30 | Coffee break & Free time |
| 18:00-19:00 | Stand « Peer Community in »* |
| 19:00-20:30 POSTERS |
Wine and posters (1 to 11) |
| 20:30 | Dinner |
Wednesday, June 27
| 9:30-10:45 KEYNOTE |
V. MININ - Algorithmic and statistical advances in phylogenetic stochastic mapping |
| 10:45-11:15 | Coffee break |
| 11:15-12:15 3x 20 min TALKS (including questions) |
R. DURBIN - Selection on hybridisation and gene flow in the Lake Malawi cichlid fish adaptive radiation A. ZHUKOVA - Reconstructing and Predicting the Emergence and Transmission of Drug Resistance Mutations in HIV M. FOURMENT - Phylogenetic inference with streaming data using sequential Monte Carlo |
| 12:30 | Lunch and free afternoon (beach, hiking, theorems, etc.) |
| 20:30 | Dinner |
Thursday, June 28
| 9:30-10:45 KEYNOTE |
C. COLIJN - Using genomic data and modelling to forecast population composition and design vaccines |
| 10:45-11:15 | Coffee break |
| 11:15-12:35 4x 20 min TALKS (including questions) |
T. VAUGHAN - An MCMC algorithm for Bayesian inference of hard polytomies P. BILLER - On the robustness of Evolvability under different mutators M. MOSLONKA-LEFEBVRE - The phylodynamics of partner notification and contact tracing in HIV epidemics J. PENSAR - Genome-wide epistasis analysis |
| 13:00 | Lunch |
| 14:00-15:00 3x 20 min TALKS (including questions) |
K. PARAG - Optimally Robust Design for Inference under Phylogenetic Coalescent Models I. ARBISSER - FST never satisfies the triangle inequality for biallelic markers with distinct allele frequencies P. VITOR - Tracking selection in time-series population genomic data using ABC random forests |
| 15:00-15:15 | Break |
| 15:15-16:30 KEYNOTE |
L. DURET - Biased gene conversion: the dark side of recombination |
| 16:30 | Coffee break & Free time |
| 19:00-20:30 POSTERS |
Wine and posters (12 to 22) |
| 20:30 | Dinner |
Friday, June 29
| 9:30-10:45 KEYNOTE |
J. LAGERGREN - Reconstructing tissue trees |
| 10:45-11:15 | Coffee break |
| 11:15-12:30 KEYNOTE |
J. NOVEMBRE - New lenses on genetic variation: Tools for understanding geographic structure |
| 12:45 | Lunch and then farewell session |
| 14:15 | Bus to Montpellier |
Proposed Posters
> Poster 1 : Stochastic mapping and the analysis of selection
Guéguen Laurent (LBBE - UCB Lyon 1, FR)
> Poster 2 : Quantifying the accuracy of ancestral state prediction in a phylogenetic tree under maximum parsimony
Herbst Lina (Greifswald University, DE)
> Poster 3 : New Generation Phylogeny.fr
Frederic LEMOINE (Institut Pasteur, FR)
> Poster 4 : A framework for cost-constrained genome rearrangement under Double Cut and Join
Simonaitis Pijus (University Of Montpellier, LIRMM, FR)
> Poster 5 : Assessing the contribution of post-mortem transmision for the 2014-2016 Ebola outbreak, using regression-ABC
Emma Saulnier (Laboratoire MIVEGEC, IBC, FR)
> Poster 6 : Phylodynamics for a better understanding of dengue
Nguyen-Van-Yen Benjamin (Institut Pasteur - IBENS, FR)
> Poster 7 : Rapidly computing gene tree probabilities for concordant gene trees
TRUSZKOWSKI Jakub (LIRMM, MAB: Méthodes Et Algorithmes Pour La Bio Informatique, FR)
> Poster 8 : Phylogenetic inference using weakly displayed gene trees
Janssen Remie (TU Delft, NL)
> Poster 9 : Evolution of Replication Origins in Vertebrate Genomes: Rapid Turnover Despite Selective Constraints
Florian Massip (MDC Berlin, DE)
> Poster 10 : A quadratic polynomial formulation enables fast likelihood calculation for multivariate Gaussian phylogenetic comparative models
Mitov Venelin (ETH Zurich, CH)
> Poster 11 : Detection of strong decline in populations by genomic approaches.
Kerdoncuff Elise ( Institut De Systématique, Evolution, Biodiversité (ISYEB), MNHN, Paris, France. , FR)
> Poster 12 : Linking Chromosomal Rearrangement to Chromatin Structure in the Drosophila
Pulicani Sylvain (LIRMM, EPIGNEMED MAB: Méthodes Et Algorithmes Pour La Bio Informatique, FR)
> Poster 13 : The mystery of the U-shaped spectra
Guillaume Achaz (Collège De France, FR)
> Poster 14 : Whole genome analysis unravels the epidemiological and evolutionary dynamics of RSV genotype ON1 strains
Otieno James (KEMRI-Wellcome Trust Research Programme, KE)
> Poster 15 : Transcriptomic landscape of paradoxical reaction in Buruli ulcer
Jeremy Manry (Inserm, Institut Imagine, Paris, France, FR)
> Poster 16 : Revealing Convergent Evolution in Virus Genomes
Morel Marie (Institut Pasteur, FR)
> Poster 17 : The effect of consanguinity on between-individual identity-by-descent sharing
Severson Alissa (Stanford University, USA)
> Poster 18 : Statistical inference of the rate of adaptive evolution between closely related species in a time-dependent Poisson random field framework
Mugal Carina Farah (Uppsala University, SE)
> Poster 19 : Inference of species histories in the presence of gene flow
Mueller Nicola Felix (D-BSSE, ETH Zuerich; Swiss Institute Of Bioinformatics, CH)
> Poster 20 : Phylodynammics of infections : comparing simulators
Gonché DANESH (Laboratoire “Maladies Infectieuses Et Vecteurs, Ecologie, Evolution Et Contrôle” (UMR CNRS, IRD, UM), Montpellier, France, FR)
> Poster 21 : Mathematical and statistical properties of the phylogenetic transfer distance
DAVILA FELIPE Miraine (Institut Pasteur, FR)
> Poster 22 : A fast likelihood method to reconstruct and visualize ancestral scenarios of character evolution
ISHIKAWA Sota (University Of Tokyo, JP)
* Peer Community in
Peer Community in : a free, public and transparent peer-review system for preprints
To offer an alternative to the current publication system - which is particularly costly and not very transparent - we initiated the Peer Community in (PCI) project - with PCI Evolutionary Biology, PCI Ecology, PCI Paleontology and, possibly in a few weeks, PCI Computational Statistics. PCI is based on the publication of evaluations (peer-reviews) and recommendations of articles not yet published, but deposited - and freely accessible - in electronic form in an open archive available on the Internet (eg arXiv, bioRxiv..). These evaluations and recommendations are carried out voluntarily by the researchers without any link with private publishers.
Publication fees disappear: PCI offers the possibility of validating, distributing and consulting articles submitted to it free of charge. The deadlines for access to information are null: the scientific articles evaluated are deposited in the open archives as soon as they are written. The system becomes transparent: reviews, editorial decisions, authors' responses and recommendations are published on the website of the scientific community concerned.
Interested? Need further explanation on how to proceed? Please contact us at contact@peercommunityin.org
http://evolbiol.peercommunityin.org
http://peercommunityin.org
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