Homepage Bioinformatics for Africa
Nairobi 2007
Méthodes et Algorithmes pour la BioinformatiqueAfrican Society for Bioinformatics and Computational Biology

Conference on the Bioinformatics
of African Pathogens and Disease Vectors
28 May 07 – 2 Jun 07
ILRI and ICIPE Campus, Nairobi, Kenya
PROGRAM
Download the program in PDF
Monday, May 28, 2007: Genomics
Morning Session (Chair: Olivier Gascuel)

8:00 a.m. - 9:00 a.m.

Registration

9:00 a.m. -

9:30 a.m.

Opening Welcome:

  • Christian Borgemeister, Alia Benkahla, Olivier Gascuel and Daniel Masiga

9:30 a.m. -

10:30 a.m.

Keynote 1:

  • Winston Hide (ZA)
    Translation of Genomics in endemic countries

10:30 a.m. -

11:00 a.m.

Coffee Break

11:00 a.m. -

12:00 a.m.

Keynote 2:

  • Appolinaire Djikeng (US)
    Genomics and Emerging Viral Infectious Diseases: Influenza and Coronaviruses

12:00 a.m. -

2:00 p.m.

Lunch - Poster session 1

2:00 p.m. -

3:00 p.m.

Keynote 3:

3:00 p.m. -

3:40 p.m.

Paper Presentations

  • Nicky Mulder (ZA)
    Comparative analysis of pathogenic and non-pathogenic microbial genomes

    presentation
  • Karyn Megy (UK)
    VectorBase, Resource Center for Invertebrate Vectors of Human Pathogens

    presentation

3:40 p.m. -

4:10 p.m.

Coffee Break

4:10 p.m. -

5:10 p.m.

Paper Presentations

  • Adane Abraham (ET)
    Characterization, Genome Organization and phylogenetic analysis of Two New Viruses Infecting Legume Crops in Ethiopia

    presentation
  • Daniel Masiga (KE)
    DNA barcoding and taxonomy of Glossina

    presentation
  • Ezekiel Adebiyi (NG)
    A convoluted problem and heuristic solution for predicting ensembles and transitions for pseudoknots polymers

    presentation

5:30 p.m. -

Cocktail Party at Duduville International Guest House (DIGC) Terrace (ICIPE)

Tuesday, May 29, 2007: Functionnal genomics and databases
Morning session (chair: Nicky Mulder)

9:00 a.m. -

10:00 a.m.

Keynote 4:

  • Matthew Berriman (UK)
    Data mining parasite genomes

10:00 a.m. -

10:30 a.m.

Coffee Break

10:30 a.m. -

11:50 a.m.

Keynote 5:

  • Tulio De Oliveira (ZA)
    Resources and databases for HIV

  • Gonedelé Bi Sery (CI)
    Clade diversity of HIV-1 subtype A pol gene in Côte d'Ivoire:
    evidence of underestimated rate of recombinant form

    presentation

11:50 a.m. -

2:00 p.m.

Lunch - Poster session 2

Afternoon session (chair: Ikram Guizani)

2:00 p.m. -

3:00 p.m.

Keynote 6:

  • Amos Bairoch (SW)
    The annotation of proteins from pathogens in UniProtKB/Swiss-Prot: current status and future plans

    presentation

3:00 p.m. -

3:40 p.m.

Paper Presentations

  • Sheila Cecily Ommeh (KE)
    Analysis of signatures of polymorphisms and positive adaptive selection at candidate genes for genetic resistance to avian viral diseases

    presentation
  • Heikki Lehvaslaiho (ZA)
    A Molecular Integration Database System for all: Integration of HIV clinical and molecular data using open source genome management tools

    presentation

3:40 p.m. -

4:10 p.m.

Coffee Break

4:10 p.m. -

5:10 p.m.

Paper Presentations

  • Laurent Bréhélin (FR)
    A guilt by association method for the prediction of Plasmodium falciparum gene function

    presentation
  • Sondos Smandi (TN)
    Global analysis of Leishmania genes expression using SAGE libraries

    presentation
  • Amel Ghouila (TN)
    Multi-SOM: A novel clustering approach for gene expression analysis

    presentation

5:10 p.m. - 5:20 p.m.

ISCB-SC, Segun Fatumo (NG)

5:20 p.m. - 6:30 p.m.

International Glossina Genome initiative (IGGI) Meeting (closed session)
(chairman: Win Hide)

Wednesday, May 30, 2007: Evolution (a.m.) & Target discovery (p.m.)

6:15 a.m. -

1:00 p.m.

Visit to Nairobi National Park

1:00 p.m. -

2:30 p.m.

Lunch

Afternoon session (chair: Alia Benkahla)

2:30 p.m. -

3:30 p.m.

Keynote 8:

  • Michel Tibayrenc (FR)
    Trypanosomia, host/parasite/vector coevolution

    presentation

3:30 p.m. -

4:00 p.m.

Coffee Break

4:00 p.m. -

5:00 p.m.

Paper presentations

  • Niven Abdel Wahab Salih (SD)
    Dynamics of migrations of malaria protective polymorphisms across Africa's Sahel

  • Etienne de Villiers (KE)
    Identification of Theileria parva vaccine candidate genes using a bioinformatics approach

    presentation
  • Lillian Wambua (KE)
    Discovery of novel drug targets against pathogenic protozoa: The promise of metabolic reconstruction

    presentation
  • Ikram Guizani (TN)
    LBTx: A tool box for the selection and analysis of potential Leishmania targets for intervention and disease control

5:10 p.m. -

6:10 p.m.

ASBCB Annual General Meeting (AGM)
(chairman: Raphael isokpehi)

Thursday, May 31, 2007: Structure & Drugs
Morning session (chair: Appolinaire Djikeng)

9:00 a.m. -

10:00 a.m.

Keynote 9:

  • Raphael Isokpehi (US)
    Information Superstructure for Protozoan Aquaporins

10:00 a.m. -

10:30 a.m.

Coffee Break

10:30 a.m. -

11:30 a.m.

Keynote 10:

  • Mohammad Afshar (FR)
    In silico drug design

11:30 a.m. -

12:30 p.m.

Paper Presentations

  • Marion O. Owolabi (NG)
    Computational Discovery of Drugs Resistance Mechanism(s) of the Malaria Parasite (Plasmodium falciparum (P.f))

    presentation
  • Leo Ghemtio (FR)
    Large-scale distributed
    in silico drug discovery using VSM-G (Virtual Screening Manager for computational Grids)

    presentation
  • Vincent Breton/Vinod Kasam (FR)
    In silico docking against malaria: the WISDOM initiative

    presentation

12:30 p.m. -

2:30 p.m.

Lunch - Poster session 3 (Special software/Database Session/Poster Nos 30, 33, 35-37)

2:30 p.m. -

3:30 p.m.

Keynote 11:

  • Eric Maréchal (FR)
    In silico strategies for target discovery

    presentation

3:30 p.m.

Capacity building Session (chair: Win Hide, SANBI)

  • Anne Corval, CNRS (Pretoria Office)
    Perspectives of the Africa – France cooperation in bioinformatics

    Open session on Capacity Building (with Tea break)

6:00 p.m.

Conference Dinner: "African Paradise-Safari Park Hotel"

SOFTWARE DEMONSTRATIONS (ILRI CAMPUS)
Transport leaves icipe (DIGC) at 08.00 am, returns from ILRI
at 17.00 pm on 1st June and 16.00 pm on 2nd June

Friday, June 1, 2007

9:00 a.m. -

5:30 p.m.

Amos Bairoch (CH)

Saturday, June 2, 2007

9:00 a.m. -

12:30 p.m.

Matthew Berriman (UK)
Artemis: A DNA sequence viewer and annotation tool
Artemis Comparison Tool (ACT)

2:00 p.m. -

4:00 p.m.

Karyn Mégy (UK)
VectorBase


ILRI ICIPE CNRS

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