Benoît Aliaga joins for his master internship

Welcome Benoît


Software for efficient metagenomics and applications to virus metagenomics


Information fuelled biophysical models for the control of gene expression

Read mapping on de Bruijn graphs

Background. Next Generation Sequencing (NGS) has dramatically enhanced our ability to sequence genomes, but not to assemble them. In practice, many published genome sequences remain in the state of a large set of contigs. Each contig describes the …

Approximate Common Intervals in Multiple Genome Comparison

We consider the problem of inferring approximate common intervals of multiple genomes. Genomes are modelled as sequences of homologous genes families identifiers, and approximate common intervals represent conserved regions possibly showing …