People
Principal Investigators
Eric Rivals
CNRS Research Director in Computer Science and Bioinformatics
String algorithms, Data indexing, Sequence analysis, Data structures, Genomics, Data mining, AI, Information Retrieval, Cancer
Researchers
Sanjana Govindaswamy
engineer in machine learning & data science
machine learning, AI and data mining, statistical analysis
Doctoral Students
Visitors
Elle Loughran
Currently PhD student at Trintiy College Dublin and visiting scientist at the LIRMM
Evolutionary biology, Bioinformatics, Population Genomics
Collaborators
Christophe HIRTZ
Prof at Univ. Montpellier, head of PPC platform
biochemistry, proteomics, neurodegenerative diseases
Benjamin Linard
Former researcher at Spygen company hosted by the LIRMM, former postdoctoral fellow in bioinformatics in our group. Now Researcher at INRAE in Toulouse, France.
metagenomics, entomology, bioinformatics
Alumni
Pengfei Wang
Former PhD student in computer science within ALPACA project. Now Postdoctoral Fellow at The Chinese University of Hong Kong.
Algorithms, Modelling, Pangenomics, Bioinformatics
Julie Ripoll
former postdoctoral fellow and engineer in bioinformatics
NGS processing, pipeline, statistical analysis
Marion Buffard
Former temporary teaching assistant (ATER) at Univ. Montpellier, and former postdoc researcher in bioinformatics at the LIRMM. Currently, assistant professor at Montpellier University.
system biology, computational biology, bioinformatics
Bastien Cazaux
former postdoctoral fellow, former PhD and master student
Algorithms, Data structures, Bioinformatics
Marie Mille
Master student in bioinformatics, internship on algorithms for probabilistic motif search.
algorithms, pattern matching & recognition, motif search, PWM, diPWM, HMM
Sébastien Relier
former PhD student in biology
Epitranscriptome, Cancer biology, Mass spectroscopy, Bioinformatics
Damien Paulet
Former engineer and postdoctoral fellow from 2014-2018.
Bioinformatics, Sequence analysis, NGS, Transcriptomics
Samuel Juhel
former Master student co-supervised with Bastien Cazaux (LIRMM)
Algorithms, Stringology, Bioinformatics, Ecology
Maxime Hebrard
former postdoctoral fellow, in collaboration with G. Piganeau (Arago, UPMC)
Bioinformatics, Sequence analysis, Visualisation, Metagenomics
Sylvain Pulicani
former PhD co-supervised with Giacomo Cavalli (IGF, CNRS), co-advised with Krister Swenson (LIRMM)
Bioinformatics, Data Analysis, Evolution and Phylogeny
Artus Bleton Pascal
Bachelor 3rd year student, internship on algorithms for word combinatorics.
algorithms, programming, AI, data science
Benoît Aliaga
Master student in bioinformatics, internship on single cell transcriptome analysis for cancer
NGS processing, pipeline, single cell, spatial transcriptomics, cancer
Benoît Penel
Master student in bioinformatics, internship on benchmarking of phylogenetic placement for metagenomic data
NGS processing, pipeline, programming, evolution, metagenomics
Charlotte Dubec
Engineering and master student in bioinformatics, internship on demultiplexing for environmental sequencing data in collaboration with SpyGen company.
algorithms, pattern matching, motif search, NGS processing, metabarcoding
Julien Veyssier
software engineer (programming, development, maintenance)
Programming, Algorithms, Bioinformatics
Leonard Rivals
Bachelor 3rd year student, internship on machine learning on mass spectrometry
machine learning, AI, algorithms, data science, programming
Nikolay Romashchenko
Former research engineer; Former PhD student in computer science
Algorithms, Metagenomics, Bioinformatics