People
Principal Investigators
Eric Rivals
CNRS Research Director in Computer Science and Bioinformatics
String algorithms, Data indexing, Sequence analysis, Data structures, Genomics, Data mining, AI, Information Retrieval, Cancer
Researchers
Nikolay Romashchenko
Currently research engineer; Former PhD student in computer science
Algorithms, Metagenomics, Bioinformatics
Doctoral Students
Master Students
Collaborators
Benjamin Linard
researcher at Spygen company, former postdoctoral fellow in bioinformatics
metagenomics, entomology, bioinformatics
Alumni
Sébastien Relier
former PhD student in biology
Epitranscriptome, Cancer biology, Mass spectroscopy, Bioinformatics
Bastien Cazaux
former postdoctoral fellow, former PhD and master student
Algorithms, Data structures, Bioinformatics
Damien Paulet
Former engineer and postdoctoral fellow from 2014-2018.
Bioinformatics, Sequence analysis, NGS, Transcriptomics
Samuel Juhel
former Master student co-supervised with Bastien Cazaux (LIRMM)
Algorithms, Stringology, Bioinformatics, Ecology
Maxime Hebrard
former postdoctoral fellow, in collaboration with G. Piganeau (Arago, UPMC)
Bioinformatics, Sequence analysis, Visualisation, Metagenomics
Sylvain Pulicani
former PhD co-supervised with Giacomo Cavalli (IGF, CNRS), co-advised with Krister Swenson (LIRMM)
Bioinformatics, Data Analysis, Evolution and Phylogeny
Benoît Aliaga
Master student in bioinformatics, internship on single cell transcriptome analysis for cancer
NGS processing, pipeline, single cell, spatial transcriptomics, cancer
Benoît Penel
Master student in bioinformatics, internship on benchmarking of phylogenetic placement for metagenomic data
NGS processing, pipeline, programming, evolution, metagenomics
Charlotte Dubec
Engineering and master student in bioinformatics, internship on demultiplexing for environmental sequencing data in collaboration with SpyGen company.
algorithms, pattern matching, motif search, NGS processing, metabarcoding
Julien Veyssier
software engineer (programming, development, maintenance)
Programming, Algorithms, Bioinformatics
Marie Mille
Master student in bioinformatics, internship on algorithms for probabilistic motif search.
algorithms, pattern matching & recognition, motif search, PWM, diPWM, HMM