People

Principal Investigators

Eric Rivals

CNRS Research Director in Computer Science and Bioinformatics

String algorithms, Data indexing, Sequence analysis, Data structures, Genomics, Data mining, AI, Information Retrieval, Cancer

Researchers

Avatar

Nikolay Romashchenko

Currently research engineer; Former PhD student in computer science

Algorithms, Metagenomics, Bioinformatics

Doctoral Students

Avatar

Pengfei Wang

PhD student in computer science

Algorithms, Modelling, Pangenomics, Bioinformatics

Avatar

Jordan Moutet

PhD student

Algorithms, Optimisation, Phylogeny, Bioinformatics

Visitors

Avatar

Elle Loughran

Currently PhD student at Trintiy College Dublin and visiting scientist at the LIRMM

Evolutionary biology, Bioinformatics, Population Genomics

Collaborators

Avatar

Alexandre DAVID

INSERM researcher at IGF

molecular biology, cancer

Avatar

Christophe HIRTZ

Prof at Univ. Montpellier, head of PPC platform

biochemistry, proteomics, neurodegenerative diseases

Avatar

Benjamin Linard

researcher at Spygen company, former postdoctoral fellow in bioinformatics

metagenomics, entomology, bioinformatics

Avatar

Fabio Pardi

CNRS researcher in Bioinformatics

metagenomics, entomology, bioinformatics

Alumni

Avatar

Julie Ripoll

former postdoctoral fellow in bioinformatics

NGS processing, pipeline, statistical analysis

Avatar

Bastien Cazaux

former postdoctoral fellow, former PhD and master student

Algorithms, Data structures, Bioinformatics

Avatar

Marie Mille

Master student in bioinformatics, internship on algorithms for probabilistic motif search.

algorithms, pattern matching & recognition, motif search, PWM, diPWM, HMM

Avatar

Rodrigo Cánovas

former postdoctoral fellow at IBC

Algorithms, Data structures, Bioinformatics

Avatar

Sébastien Relier

former PhD student in biology

Epitranscriptome, Cancer biology, Mass spectroscopy, Bioinformatics

Avatar

Damien Paulet

Former engineer and postdoctoral fellow from 2014-2018.

Bioinformatics, Sequence analysis, NGS, Transcriptomics

Avatar

Samuel Juhel

former Master student co-supervised with Bastien Cazaux (LIRMM)

Algorithms, Stringology, Bioinformatics, Ecology

Avatar

Maxime Hebrard

former postdoctoral fellow, in collaboration with G. Piganeau (Arago, UPMC)

Bioinformatics, Sequence analysis, Visualisation, Metagenomics

Avatar

Sylvain Pulicani

former PhD co-supervised with Giacomo Cavalli (IGF, CNRS), co-advised with Krister Swenson (LIRMM)

Bioinformatics, Data Analysis, Evolution and Phylogeny

Avatar

Raluca Uricaru

former master and PhD student

Algorithms, Machine learning, Bioinformatics

Avatar

Amal Makrini

former engineer in bioinformatics

NGS processing, pipeline, workflow, genomics

Avatar

Benoît Aliaga

Master student in bioinformatics, internship on single cell transcriptome analysis for cancer

NGS processing, pipeline, single cell, spatial transcriptomics, cancer

Avatar

Benoît Penel

Master student in bioinformatics, internship on benchmarking of phylogenetic placement for metagenomic data

NGS processing, pipeline, programming, evolution, metagenomics

Avatar

Céline Mandier

engineer in bioinformatics

cancer, genomics, NGS processing, pipeline, workflow

Avatar

Charlotte Dubec

Engineering and master student in bioinformatics, internship on demultiplexing for environmental sequencing data in collaboration with SpyGen company.

algorithms, pattern matching, motif search, NGS processing, metabarcoding

Avatar

Guillaume Scholz

former postdoctoral fellow

Applied math, Evolution, Bioinformatics

Avatar

Julien Veyssier

software engineer (programming, development, maintenance)

Programming, Algorithms, Bioinformatics