metagenomics

Welcome to Charlotte

Charlotte Dubec joins the team for an internship in collaboration with SpyGen company.

PEWO framework hosts a new tool

PEWO hosts, App-Spam, a new phylogenetic placement tool

PEWO presented at ALPHY meeting

Learn about PEWO online!

Publication in Bioinformatics

SHERPAS' paper accetped in the journal Bioinformatics

PEWO benchmarking framework tool got published

PEWO: a collection of workflows to benchmark phylogenetic placement Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals Bioinformatics, btaa657, https://doi.org/10.1093/bioinformatics/btaa657 2020 Free author version https://hal.archives-ouvertes.fr/hal-02905244

Sherpas detects recombination in virus strains

Sherpas is a new NGS tool capable of predicting recombination in viral read sequences, given a tree and reference sequences of known virus groups. See preprint on bioRxiv (Posted June 22, 2020): Rapid screening and detection of inter-type viral recombinants using phylo-k-mers 10.1101/2020.06.22.161422