NGS

Benoît Aliaga joins for his master internship

Welcome Benoît

INSERM and CNRS press releases about our work!

Both the INSERM and CNRS issued press news on their websites.

Welcome to Charlotte

Charlotte Dubec joins the team for an internship in collaboration with SpyGen company.

New publication in Nature Communications

Epitranscriptomic study published in Nature Communications

PEWO framework hosts a new tool

PEWO hosts, App-Spam, a new phylogenetic placement tool

PEWO presented at ALPHY meeting

Learn about PEWO online!

Publication in Bioinformatics

SHERPAS' paper accetped in the journal Bioinformatics

Fast_place

Software for efficient metagenomics and applications to virus metagenomics

PEWO benchmarking framework tool got published

PEWO: a collection of workflows to benchmark phylogenetic placement Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals Bioinformatics, btaa657, https://doi.org/10.1093/bioinformatics/btaa657 2020 Free author version https://hal.archives-ouvertes.fr/hal-02905244

Sherpas detects recombination in virus strains

Sherpas is a new NGS tool capable of predicting recombination in viral read sequences, given a tree and reference sequences of known virus groups. See preprint on bioRxiv (Posted June 22, 2020): Rapid screening and detection of inter-type viral recombinants using phylo-k-mers 10.1101/2020.06.22.161422