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Alteration of ribosome function upon 5-fluorouracil treatment favors cancer cell drug-tolerance
FTO-mediated cytoplasmic m6Am demethylation adjusts stem-like properties in colorectal cancer cell
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers
Efficient Construction of Hierarchical Overlap Graphs
PEWO: a collection of workflows to benchmark phylogenetic placement
Hierarchical Overlap Graph
AQUAPONY: visualization and interpretation of phylogeographic information on phylogenetic trees
Linking indexing data structures to de Bruijn graphs: Construction and update
Linking BWT and XBW via Aho-Corasick Automaton: Applications to Run-Length Encoding
Fast and Accurate Genome-Scale Identification of DNA-Binding Sites
Practical lower and upper bounds for the Shortest Linear Superstring
Superstrings with multiplicities
Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia
Ribo-seq enlightens codon usage bias
De novo assembly of viral quasispecies using overlap graphs
Full Compressed Affix Tree Representations
Population genomics of picophytoplankton unveils novel chromosome hypervariability
Rearrangement Scenarios Guided by Chromatin Structure
The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings
Accurate self-correction of errors in long reads using de Bruijn graphs
Read mapping on de Bruijn graphs
A linear time algorithm for Shortest Cyclic Cover of Strings
Shortest DNA Cyclic Cover in Compressed Space
Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Superstring Graph: A New Approach for Genome Assembly
Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree
The ancient Yakuts: a population genetic enigma
YOC, A new strategy for pairwise alignment of collinear genomes
Reverse engineering of compact suffix trees and links: A novel algorithm
LoRDEC: accurate and efficient long read error correction
An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
Approximation of Greedy Algorithms for Max-ATSP, Maximal Compression, Maximal Cycle Cover, and Shortest Cyclic Cover of Strings
Diversity of Prdm9 Zinc Finger Array in Wild Mice Unravels New Facets of the Evolutionary Turnover of this Coding Minisatellite
From Indexing Data Structures to de Bruijn Graphs
Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome
CRAC: an integrated approach to the analysis of RNA-seq reads
Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data
Approximate Common Intervals in Multiple Genome Comparison
Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps
Evolutionary process of a tetranucleotide microsatellite locus in Acipenseriforms
An alternative approach to multiple genome comparison
Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features
Querying large read collections in main memory: a versatile data structure
Novel definition and algorithm for chaining fragments with proportional overlaps
Sequence analysis of two alleles reveals that intra-and intergenic recombination played a role in the evolution of the radish fertility restorer (Rfo)
MPSCAN: Fast Localisation of Multiple Reads in Genomes
Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity
Hardness of optimal spaced seed design
Detection of Recombination in Variable Number Tandem Repeat Sequences
Transcriptome annotation using tandem SAGE tags
Detecting microsatellites within genomes: significant variation among algorithms
Longest common subsequence problem for unoriented and cyclic strings
Species-wide distribution of highly polymorphic minisatellite markers suggests past and present genetic exchanges among house mouse subspecies
Formation of the Arabidopsis Pentatricopeptide Repeat Family
Tiling an Interval of the Discrete Line
Hardness results for the center and median string problems under the weighted and unweighted edit distances
Hardness of Optimal Spaced Seed Design
A survey on algorithmic aspects of tandem repeats evolution
Combinatorics of periods in strings
Comparison of Minisatellites
Complexities of the Centre and Median String Problems
On the Distribution of the Number of Missing Words in Random Texts
Comparison of minisatellites
Combinatorics of Periods in Strings
GeneNest: automated generation and visualization of gene indices
Exact and Efficient Computation of the Expected Number of Missing and Common Words in Random Texts
q-gram based database searching using a suffix array (QUASAR)
Location of repetitive regions in sequences by optimizing a compression method
Computational approaches to identify leucine zippers
Optimal representation in average using Kolmogorov complexity
The Transformation Distance: A Dissimilarity Measure Based on Movements of Segments
Compression and genetic sequence analysis
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