B. Gilles, C. de Bourguignon, P. Croisille, G. Millet, M. Viallon, O. Beuf,

Automatic segmentation for volume quantification of quadriceps muscle head in athletes during an extreme mountain ultra-marathon,

proc. of ISMRM, 766: 2016.

C Herlin, G Subsol, B Gilles, G Captier, B Chaput,

Three-Dimensional surface imaging is not enough for surgical simulation,

Plastic and reconstructive surgery, 137 (1), 246e-247e: 2016.

M. Tournier, M. Nesme, B. Gilles, F. Faure,

Stable Constrained Dynamics,

ACM Transactions on Graphics, proc. of SIGGRAPH, 34(4):132, 2015.

R. Malgat, B. Gilles, D.I.W. Levin, M. Nesme, F. Faure,

Multifarious Hierarchies of Mechanical Models for Artist Assigned Levels-of-Detail,

proc. of SCA, pp 27-36, 2015.

S Boussouar, O Bouhelal, B Gilles, F Faure, C Vaniet, D Balvay, R Douard, J-M Chevallier, P Halimi, CA Cuénod,

Segmentation automatique des espaces profonds de la tête et du cou par des techniques de morphing,

Morphologie, 99 (326): 109, 2015.

C. Herlin, A. Chica-Rosa, G. Subsol, B. Gilles, F. Macri, J-P. Beregi, G. Captier,

Three-dimensional study of the skin/subcutaneous complex using in vivo whole body 3T MRI: review of the literature and confirmation of a generic pattern of organization,

Surgical and Radiologic Anatomy, 2015.

F. Boudon, J. Chopard, O. Ali, B. Gilles, O. Hamant, A. Boudaoud, J. Traas, C. Godin,

A Computational Framework for 3D Mechanical Modeling of Plant Morphogenesis with Cellular Resolution,

PLoS Computational Biology, 11(1), 2015.

A-H. Dicko, N. Tong-Yette, B. Gilles, F. Faure, O. Palombi,

Construction and Validation of a Hybrid Lumbar Spine Model For the Fast Evaluation of Intradiscal Pressure and Mobility,

Int. Conf. on Orthopaedic Surgery, Biomechanics and Clinical Applications; World Academy of Science, Engineering and Technology (WASET), 9(2), 134-145, 2015.

C. Herlin, B. Gilles, G. Subsol, G. Captier,

Generic 3D Geometrical and Mechanical Modeling of the Skin/Subcutaneous Complex by a Procedural Hybrid Method,

Int. Symposium on Biomedical Simulation, ISBMS, vol. 8789, p173, 2014.

Best paper award

M. Sassi, O. Ali, F. Boudon, G. Cloarec, U. Abad, C. Cellier, X. Chen, B. Gilles, P. Milani, J. Friml, T. Vernoux, C. Godin, O. Hamant, J. Traas,

An Auxin-Mediated Shift toward Growth Isotropy Promotes Organ Formation at the Shoot Meristem in Arabidopsis,

Current Biology, 24, 1-8, 2014.

J-P. Bernard, B. Gilles, C. Godin,

Combining Finite Element Method and L-Systems Using Natural Information Flow Propagation to Simulate Growing Dynamical Systems,

Int. conf. on the theory and practice of natural computing, TNPC, vol. 8890, 2014.

Y. Berranen, M. Hayashibe, D. Guiraud, B. Gilles,

Real-time Muscle Deformation via Decoupled Modeling of Solid and Muscle Fiber Mechanics,

Medical Image Computing and Computer Assisted Intervention, MICCAI, vol. 8674, pp 65-72, 2014.

M. Tournier, M. Nesme, F. Faure, B. Gilles,

Velocity-based adaptivity of deformable models,

Computers & Graphics, 45, pp 75-85, 2014.

M. Tournier, M. Nesme, F. Faure, B. Gilles,

Seamless Adaptivity of Elastic Models,

Graphics Interface, pp 17-24, 2014.

A. Bauer, F. Ulliana, A.H. Dicko, B. Gilles, O. Palombi, F. Faure,

My Corporis Fabrica : Making Anatomy Easy,

SIGGRAPH Talks, 2014.

A-H. Dicko, T. Liu, B. Gilles, L. Kavan, F. Faure, O. Palombi, M-P. Cani,

Anatomy Transfer,

ACM Transactions on Graphics, proc. of SIGGRAPH Asia, 32 (6), 2013.

B. Gilles, G. Bousquet, F. Faure, D.K. Pai,

Frame-based interactive simulation of complex deformable objects,

Deformation Models, Lecture Notes in Computational Vision and Biomechanics, Springer, M. González Hidalgo, A. Mir Torres, J. Varona Gómez (Eds.), 7, pp 145-166, 2013.

A-H. Dicko, B. Gilles, F. Faure, O. Palombi,

From Generic to Specific Musculoskeletal Simulations using an Ontology-based Modeling Pipeline,

Intelligent Computer Graphics, Springer, D. Plemenos, G. Miaoulis (Eds.), 441, pp 227-242, 2013.

F. Faure, C. Duriez, H. Delingette, J. Allard, B. Gilles, S. Marchesseau, H. Talbot, H. Courtecuisse, G. Bousquet, I. Peterlik, S. Cotin,

SOFA: A Multi-Model Framework for Interactive Physical Simulation,

Soft Tissue Biomechanical Modeling for Computer Assisted Surgery, Springer, Y. Payan (Ed.), 11, pp 283-321, 2012.

F. Faure, B. Gilles, G. Bousquet, D.K. Pai,

Sparse Meshless Models of Complex Deformable Solids,

ACM Transactions on Graphics, proc. of SIGGRAPH, 30(4):73, 2011.

B. Gilles, G. Bousquet, F. Faure, D.K. Pai,

Frame-based Elastic Models,

ACM Transactions on Graphics, presented at SIGGRAPH, 30(2):15, 2011.

D.I.W. Levin, B. Gilles, B. Madler, D.K. Pai,

Extracting skeletal muscle fiber fields from noisy diffusion tensor data,

Medical Image Analysis, 15(3), pp 340-353, 2011.

B. Gilles, L. Revéret, D.K. Pai,

Creating and animating subject-specific anatomical models,

Computer Graphics Forum, presented at Eurographics’11, 29(8), pp 2340-2351, 2010.

B. Gilles, N. Magnenat-Thalmann,

Musculoskeletal MRI segmentation using multi-resolution simplex meshes with medial representations,

Medical Image analysis, 14(3), pp 291-302, 2010.

D.K. Pai, K. van den Doel, T. Edmunds, B. Gilles, D.I.W. Levin, S. Sueda, Q. Wei, S.H. Yeo,

Sensorimotor physiology: modeling, imaging, and neural control,

SIGGRAPH Talks, 2010.

B. Gilles, F. Kolo Christophe, N. Magnenat-Thalmann, C.D. Becker, S.R. Duc, J. Menetrey, P. Hoffmeyer,

MRI-based Assessment of Hip Joint Translations,

Journal of Biomechanics, 42(9), pp 1201-1205, 2009.

B. Gilles, D.K. Pai,

Fast Musculoskeletal Registration based on Shape Matching,

Medical Image Computing and Computer Assisted Intervention, MICCAI, pp. 822-829, 2008.

D.I.W. Levin, B.Gilles, B. Mädler, D.K. Pai,

A Fiber Tracking Method for Building Patient Specific Dynamic Musculoskeletal Models from Diffusion Tensor Data,

MICCAI Workshop on Computational Diffusion MRI, pp. 62-71, 2008.

Jury members: N. Magnenat-Thalmann, H. Delingette, G. Székely, T. Pun,

Anatomical and kinematical modelling of the musculoskeletal system from MRI,

Phd Thesis, University of Geneva, Faculty of sciences, spec. "computer science", 2007.

videos: medial axis, muscle segmentation, capsule segm., bone tracking, dynamic MRI

Diagnostiquer les pathologies articulaires en 3D,

Le Monde, 2007.

N. Magnenat-Thalmann, B. Gilles, H. Delingette, A. Giachetti, A. Marco,

Towards the virtual physiological human,

EuroGraphics tutorial, 2007.

N. Magnenat-Thalmann, B. Gilles,

Towards an Individualised Physiological Model of the Musculoskeletal System,

ERCIM news 69 on the digital patient, 25-26, april 2007.

C. Charbonnier, B. Gilles, N. Magnenat-Thalmann,

A semantic-driven clinical examination platform,

Surgetica, 2007.

L. Assassi, G. Guillard, B. Gilles, N. Magnenat-Thalmann,

Volumetric meshes based on medial representation for medical applications,

Int. Society for Computer Assisted Orthopaedic Surgery, CAOS, pp. 259-262, 2007.

B. Gilles, L. Moccozet, N. Magnenat-Thalmann,

Anatomical modelling of the musculoskeletal system from MRI,

Medical Image Computing and Computer Assisted Intervention, MICCAI, 4190, pp. 289-296, 2006.

B. Gilles, R. Perrin, N. Magnenat-Thalmann, J-P. Vallée,

Bones motion analysis from dynamic MRI: acquisition and tracking,

Academic Radiology, 12(10), pp. 2385-92, 2005.

B. Gilles, R. Perrin, N. Magnenat-Thalmann, J-P. Vallée,

Bones motion analysis from dynamic MRI: acquisition and tracking,

Medical Image Computing and Computer Assisted Intervention, MICCAI, n. 2, pp. 942-949, 2004.

D. Bartz, H. Delingette, M. Hauth, A. Linney, N. Magnenat-Thalmann, K. Mueller, Y. Wu,

Advanced Virtual Medicine: Techniques and Applications for Medicine-Oriented Computer Graphics,

EuroGraphics tutorial, 2004.

L. Yahia-Cherif, B. Gilles, T. Molet, N. Magnenat Thalmann,

Motion capture and visualization of the hip joint with dynamic MRI and optical systems,

Computer Animation and Virtual Worlds, 15(3-4), pp. 377-385, 2004.

B. Gilles, R. Perrin, L. Moccozet, J-P. Vallée, N. Magnenat-Thalmann, F.Terrier,

A methodology for anatomical 3D modelling of patient’s bones from MRI,

International society for magnetic resonance in medicine (ISMRM), 2004.

B. Gilles, R. Perrin, L. Moccozet, J-P. Vallée, N. Magnenat-Thalmann, F.Terrier,

A methodology for anatomical 3D modelling of patient’s bones from MRI,

Congrès annuel de la société suisse de radiologie (SSR), 2004.

L. Yahia-Cherif, B. Gilles, L. Moccozet, N. Magnenat-Thalmann,

Individualized Bone Modelling from MRI: Application to the Human Hip,

Int. Congress of Computer Assisted Radiology and Surgery, CARS, pp 1306, 2003.

M.J. Kang, L. Yahia-Cherif, T. Molet, B. Gilles, L. Moccozet, N. Magnenat-Thalmann,

Anatomy-based Optical Motion Capture for Integral Joint Motion Visualization and Analysis,

3rd International Workshop on Virtual Rehabilitation (IWVR), 2004.

F. Dupont, B. Gilles, A. Baskurt,

Progressive transmission of 3D object based on balls and cones union from medical axis transformation,

IEEE Int. Conference on Image Processing (ICIP), 2003.

F. Dupont, B. Gilles, A. Baskurt,

Lossless and scalable 3D object coding method based on medial axis transformation,

Picture coding Symposium (PCS), 2003.

F. Dupont, B. Gilles, A. Baskurt,

Transmission progressive basée sur le calcul d'axe médian,

Compression et Représentation des Signaux Audiovisuels (CORESA), 2003.

N. Magnenat-Thalmann, L. Yahia-Cherif, B. Gilles, T. Molet,

Hip Joint Reconstruction and Motion Visualization Using MRI and Optical Motion Capture,

Austrian, German and Swiss society for biomedical technology congress (EMB), pp20-23, 2003.