MAB: Méthodes et algorithmes pour la bio informatique
At the crossroad between biology and computer science, bioinformatics aims at solving biological problems using computational approaches. These techniques cover a broad range of areas, from theoretical biology to agronomy through health and environmental science. The main objective of our team is to provide new methods (string and tree algorithms, optimization methods, combinatorial approaches and statistical learning methods) to answer important biological questions (evolution, phylogenetics, comparative genomics, functional annotation of genes and proteins, malaria, HIV, cancer).
Research themes are organized in three main axes : Treatment of sequencing data, Methods for evolution analysis, and Tools for functional annotation. The software developed by the team are available on the ATGC platform.
Members
Permanents
- Vincent Berry, Professor UM
- Laurent Brehelin, Research Fellow CNRS
- Annie Chateau, Assistant Professor UM
- Anne-Muriel Chifolleau, Assistant Professor UM
- Olivier Gascuel, Research Director CNRS
- Stéphane Guindon, Research Fellow CNRS
- Vincent Lefort, Research Engineer CNRS
- Alban Mancheron, Assistant Professor UM
- Fabio Pardi, Research Fellow CNRS
- Eric Rivals, Research Director CNRS
- Krister Swenson, Research Fellow CNRS
No permanents
- Clement Agret, Doctoral
- François Chevenet, INVML
- Tom Davot, Doctoral
- Tomochika Fujisawa, CDD Engineer-Technician
- Benjamin Linard, CDD Researcher
- Yasmine Mansour, Doctoral
- Christophe Menichelli, Doctoral
- Sylvain Milanesi, CDD Engineer-Technician
- Adrien Oliva, CDD Engineer-Technician
- Damien Paulet, CDD Researcher
- Sylvain Pulicani, Doctoral
- Emma Saulnier, CDD Researcher
- Pijus Simonaitis, Doctoral
- Marie Suez, CDD Researcher
- Jakub Truszkowski, CDD Researcher
- Julien Veyssier, CDD Engineer-Technician
News
November 2017: PhD defense of Emma Saulnier : "Phylodynamique des pathogènes viraux par calcul bayésien approché". Congratulations to Emma!
November 2017 : Olivier Gascuel got the "Grand Prix INRIA Académie des Sciences". Congratulations to Olivier!
Last update on 29/03/2018
Department : Informatique
Responsible : Laurent BREHELIN
Initiative
MAB est à l'origine de la création de l'Institut de Biologie Computationnelle (IBC).
IBC est un hôtel à projets pluridisciplinaires avec un large domaine d'intervention qui s’étend de l'algorithmique et la modélisation mathématique, à la génomique, au cancer ou à l'épidémiologie. C'est un lieu de rencontre privilégié pour les chercheurs de bioinformatique, au niveaux régional, national et international.